Structural analysis of ExaC, an NAD+ -dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
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초록

The opportunistic pathogen Pseudomonas aeruginosa (Pa) utilizes ethanol as an energy source, however, ethanol metabolism generates acetaldehyde, a toxic byproduct. To mitigate this toxicity, P. aeruginosa employs aldehyde dehydrogenases (ALDHs) to oxidize acetaldehyde into less harmful compounds. ExaC, an NAD+- dependent ALDH from P. aeruginosa (PaExaC) and a member of group X ALDHs, plays a critical role in this detoxification by oxidizing both aldehydes and hydrazones. In this study, we determined the crystal structures of Pa ExaC in its apo and NAD+-bound forms. Pa ExaC functions as a homodimer, with three distinct domains: an NAD+ binding domain, a catalytic domain, and an oligomerization domain. Structural analyses revealed that Pa ExaC's substrate entry channel (SEC) is optimized for size-selective aldehyde metabolism, with Leu120, Tyr462, and Thr302. Comparative structural and docking analyses with other ALDHs further validated Pa ExaC's preference for small aliphatic aldehydes and hydrazones. These findings highlight Pa ExaC's role in aldehyde detoxification, facilitating P. aeruginosa survival in diverse environments, and provide structural insights for developing targeted inhibitors to help treat infections.

키워드

ChloramphenicolKanamycinNicotinamide Adenine DinucleotideAldehyde DehydrogenaseAldehyde DehydrogenaseAldehydesBacterial ProteinsNadAlphafoldCoot SoftwareHis-trap Immobilized Metal Affinity Chromatography ColumnPhenix SoftwareChloramphenicolEnzymeExac ProteinGenomic DnaHomodimerHydrazone DerivativeKanamycinNicotinamide Adenine DinucleotideUnclassified DrugAldehydeAldehyde DehydrogenaseBacterial ProteinAmino Acid SequenceArticleBinding AffinityBinding SiteBiocatalysisChemical ProceduresCrystal StructureCrystallizationDetoxificationEnzyme ActivityEnzyme StructureEscherichia ColiExpression VectorHydrogen BondImmobilized Metal Affinity ChromatographyMetabolismMolecular CloningMolecular DockingOligomerizationPolymerase Chain ReactionProtein ExpressionProtein PurificationPseudomonas AeruginosaSequence AlignmentSitting Drop Vapor Diffusion MethodStatic ElectricityStructure AnalysisX Ray CrystallographyX Ray DiffractionChemistryEnzyme Active SiteEnzyme SpecificityEnzymologyMolecular ModelProtein ConformationProtein MultimerizationAldehyde DehydrogenaseAldehydesBacterial ProteinsCatalytic DomainCrystallography, X-rayModels, MolecularMolecular Docking SimulationNadProtein ConformationProtein MultimerizationSubstrate SpecificityMODEL
제목
Structural analysis of ExaC, an NAD+ -dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
저자
Ko, Ji HyukJeong, Kang HwaSon, Su BinLee, Jae Young
DOI
10.1016/j.bbrc.2024.151077
발행일
2025-01
유형
Article
저널명
Biochemical and Biophysical Research Communications
742
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1 ~ 7