Artificial intelligence for natural product drug discovery

  • Mullowney, Michael W.; 
  • Duncan, Katherine R.; 
  • Elsayed, Somayah S.; 
  • Garg, Neha; 
  • van der Hooft, Justin J. J.; 
  • ... Kim, Hyunwoo; 
  • 외 52명
Citations

WEB OF SCIENCE

360
Citations

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414

초록

Developments in computational omics technologies have provided new means to access the hidden diversity of natural products, unearthing new potential for drug discovery. In parallel, artificial intelligence approaches such as machine learning have led to exciting developments in the computational drug design field, facilitating biological activity prediction and de novo drug design for molecular targets of interest. Here, we describe current and future synergies between these developments to effectively identify drug candidates from the plethora of molecules produced by nature. We also discuss how to address key challenges in realizing the potential of these synergies, such as the need for high-quality datasets to train deep learning algorithms and appropriate strategies for algorithm validation. © 2023, Springer Nature Limited.

키워드

Biological Products; Natural Product; Biological Product; Algorithm; Artificial Intelligence; Computer Analysis; Deep Learning; Drug Design; Drug Development; Drug Identification; Machine Learning; Molecular Dynamics; Natural Language Processing; Omics; Prediction; Review; Standard; Validation Study; Human; Algorithms; Artificial Intelligence; Biological Products; Drug Design; Drug Discovery; Humans; Machine Learning; MASS-SPECTROMETRY DATA; MACROMOLECULAR TARGETS; STRUCTURE ELUCIDATION; NONRIBOSOMAL PEPTIDE; LIGAND-BINDING; PREDICTION; DATABASE; SPECTRA; DESIGN; MODELS
제목
Artificial intelligence for natural product drug discovery
저자
Mullowney, Michael W.; Duncan, Katherine R.; Elsayed, Somayah S.; Garg, Neha; van der Hooft, Justin J. J.; Martin, Nathaniel I.; Meijer, David; Terlouw, Barbara R.; Biermann, Friederike; Blin, Kai; Durairaj, Janani; Gorostiola González, Marina; Helfrich, Eric J. N.; Huber, Florian; Leopold-Messer, Stefan; Rajan, Kohulan; de Rond, Tristan; van Santen, Jeffrey A.; Sorokina, Maria; Balunas, Marcy J.; Beniddir, Mehdi A.; van Bergeijk, Doris A.; Carroll, Laura M.; Clark, Chase M.; Clevert, Djork-Arné; Dejong, Chris A.; Du, Chao; Ferrinho, Scarlet; Grisoni, Francesca; Hofstetter, Albert; Jespers, Willem; Kalinina, Olga V.; Kautsar, Satria A.; Kim, Hyunwoo; Leao, Tiago F.; Masschelein, Joleen; Rees, Evan R.; Reher, Raphael; Reker, Daniel; Schwaller, Philippe; Segler, Marwin; Skinnider, Michael A.; Walker, Allison S.; Willighagen, Egon L.; Zdrazil, Barbara; Ziemert, Nadine; Goss, Rebecca J. M.; Guyomard, Pierre; Volkamer, Andrea; Gerwick, William H.; Kim, Hyun Uk; Müller, Rolf; van Wezel, Gilles P.; van Westen, Gerard J. P.; Hirsch, Anna K. H.; Linington, Roger G.; Robinson, Serina L.; Medema, Marnix H.
DOI
10.1038/s41573-023-00774-7
발행일
2023-11
유형
Review
저널명
Nature Reviews Drug Discovery
권
22
호
11
페이지
895 ~ 916