Structural and functional studies of SAV1707 from Staphylococcus aureus elucidate its distinct metal-dependent activity and a crucial residue for catalysis
  • Kim, Dong Gyun
  • Lee, Kyu Yeon
  • Lee, Sang Jae
  • Cheon, Seung Ho
  • Choi, Yuri
  • ... Ahn, Hee Chul
  • 외 2명
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초록

The metallo-beta-lactamase fold is the most abundant metal-binding domain found in two major kingdoms: bacteria and archaea. Despite the rapid growth in genomic information, most of these enzymes, which may play critical roles in cellular metabolism, remain uncharacterized in terms of structure and function. In this study, X-ray crystal structures of SAV1707, a hypothetical metalloenzyme from Staphylococcus aureus, and its complex with cAMP are reported at high resolutions of 2.05 and 1.55 angstrom, respectively, with a detailed atomic description. Through a functional study, it was verified that SAV1707 has Ni2+-dependent phosphodiesterase activity and Mn2+-dependent endonuclease activity, revealing a different metal selectivity depending on the reaction. In addition, the crystal structure of cAMP-bound SAV1707 shows a unique snapshot of cAMP that reveals the binding mode of the intermediate, and a key residue Phe511 that forms pi-pi interactions with cAMP was verified as contributing to substrate recognition by functional studies of its mutant. Overall, these findings characterized the relationship between the structure and function of SAV1707 and may provide further understanding of metalloenzymes possessing the metallo-beta-lactamase fold.

키워드

metallo-beta-lactamase foldmetal selectivityphosphodiesterasesendonucleasesStaphylococcus aureusBETA-LACTAMASESPROTEINSITEHYDROLYSISINSIGHTSBINDINGFAMILYFOLD
제목
Structural and functional studies of SAV1707 from Staphylococcus aureus elucidate its distinct metal-dependent activity and a crucial residue for catalysis
저자
Kim, Dong GyunLee, Kyu YeonLee, Sang JaeCheon, Seung HoChoi, YuriLee, Hyung HoAhn, Hee ChulLee, Bong Jin
DOI
10.1107/S2059798321001923
발행일
2021-05-01
유형
Article
저널명
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
77
페이지
587 ~ 598