Integrative analysis of RNA-sequencing and microarray for the identification of adverse effects of UVB exposure on human skin
  • Jang, Yujin
  • Na, Hye-Won
  • Shin, Dong Yeop
  • Lee, Jun
  • Han, Jun Pyo
  • ... Seo, Young Rok
  • 외 6명
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초록

Background Ultraviolet B (UVB) from sunlight represents a major environmental factor that causes toxic effects resulting in structural and functional cutaneous abnormalities in most living organisms. Although numerous studies have indicated the biological mechanisms linking UVB exposure and cutaneous manifestations, they have typically originated from a single study performed under limited conditions.Methods We accessed all publicly accessible expression data of various skin cell types exposed to UVB, including skin biopsies, keratinocytes, and fibroblasts. We performed biological network analysis to identify the molecular mechanisms and identify genetic biomarkers.Results We interpreted the inflammatory response and carcinogenesis as major UVB-induced signaling alternations and identified three candidate biomarkers (IL1B, CCL2, and LIF). Moreover, we confirmed that these three biomarkers contribute to the survival probability of patients with cutaneous melanoma, the most aggressive and lethal form of skin cancer.Conclusion Our findings will aid the understanding of UVB-induced cutaneous toxicity and the accompanying molecular mechanisms. In addition, the three candidate biomarkers that change molecular signals due to UVB exposure of skin might be related to the survival rate of patients with cutaneous melanoma.

키워드

ultra violet-Bcutaneous melanomameta-analysisbatch effectLIFnetwork analysistoxicogenomicsLEUKEMIA INHIBITORY FACTORULTRAVIOLET-RADIATIONCUTANEOUS MELANOMARISK-FACTORSMAST-CELLSPACKAGEDAMAGEMETAANALYSISCANCER
제목
Integrative analysis of RNA-sequencing and microarray for the identification of adverse effects of UVB exposure on human skin
저자
Jang, YujinNa, Hye-WonShin, Dong YeopLee, JunHan, Jun PyoKim, Hyun SooKim, Su JiChoi, Eun-JeongLee, CharlesHong, Yong DeogKim, Hyoung-JuneSeo, Young Rok
DOI
10.3389/fpubh.2024.1328089
발행일
2024-02
유형
Article
저널명
Frontiers in Public Health
12
페이지
01 ~ 09