DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data
  • Kim, Hyun Woo
  • Zhang, Chen
  • Reher, Raphael
  • Wang, Mingxun
  • Alexander, Kelsey L.
  • 외 9명
Citations

WEB OF SCIENCE

43
Citations

SCOPUS

49

초록

The identification of molecular structure is essential for understanding chemical diversity and for developing drug leads from small molecules. Nevertheless, the structure elucidation of small molecules by Nuclear Magnetic Resonance (NMR) experiments is often a long and non-trivial process that relies on years of training. To achieve this process efficiently, several spectral databases have been established to retrieve reference NMR spectra. However, the number of reference NMR spectra available is limited and has mostly facilitated annotation of commercially available derivatives. Here, we introduce DeepSAT, a neural network-based structure annotation and scaffold prediction system that directly extracts the chemical features associated with molecular structures from their NMR spectra. Using only the H-1-C-13 HSQC spectrum, DeepSAT identifies related known compounds and thus efficiently assists in the identification of molecular structures. DeepSAT is expected to accelerate chemical and biomedical research by accelerating the identification of molecular structures.

키워드

Convolutional neural networkNuclear magnetic resonanceStructure predictionSTRUCTURE ELUCIDATIONMASS-SPECTROMETRYNMR DATABASEMETABOLOMICSDISCOVERY
제목
DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data
저자
Kim, Hyun WooZhang, ChenReher, RaphaelWang, MingxunAlexander, Kelsey L.Nothias, Louis‑FélixHan, Yoo KyongShin, HyejiLee, Ki YongLee, Kyu HyeongKim, Myeong JiDorrestein, Pieter C.Gerwick, William H.Cottrell, Garrison W.
DOI
10.1186/s13321-023-00738-4
발행일
2023-08
유형
Article
저널명
Journal of Cheminformatics
15
1